The motivation theory of Deci and Ryan (1985) indicates that cooperation scripts may cause motivational problems and reactance towards the script as this theory regards self-determination as central for motivation.

Dillenbourg (2002) expressed concern that there may be a danger to "overscript" collaborative interaction. Scripting collaboration might prevent the independent, exploratory thinking required for generative learning or problem-solving. This, Dillenbourg argues, is especially true for highly coercive scripts which dictate interaction in a very detailed and inflexible way. A high degree of coercion might also decrease student motivation.